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Research Articles


Goyal S*, Kim S*, Chen IS, Chou T. Mechanisms of blood homeostasis: lineage tracking and a neutral model of cell populations in rhesus macaques. BMC Biol. 2015 Oct 20;13:85. doi: 10.1186/s12915-015-0191-8. PubMed PMID: 26486451; PubMed Central PMCID: PMC4615871.  


Kim S, Kim N, Presson AP, Metzger ME, Bonifacino AC, Sehl M, Chow SA, Crooks GM, Dunbar CE, An DS, Donahue RE, Chen IS. Dynamics of HSPC repopulation in nonhuman primates revealed by a decade-long clonal-tracking study. Cell Stem Cell. 2014 Apr 3;14(4):473-85. doi: 10.1016/j.stem.2013.12.012. PubMed PMID: 24702996; PubMed Central PMCID: PMC4009343.   


Arokium H, Kamata M*, Kim S*, Kim N, Liang M, Presson AP, Chen IS. Deep sequencing reveals low incidence of endogenous LINE-1 retrotransposition in human induced pluripotent stem cells. PLoS One. 2014 Oct 7;9(10):e108682. doi: 10.1371/journal.pone.0108682. eCollection 2014. PubMed PMID: 25289675; PubMed Central PMCID: PMC4188539.   


Kim S, Kim YC, Qi H, Su K, Morrison SL, Chow SA. Efficient identification of human immunodeficiency virus type 1 mutants resistant to a protease inhibitor by using a random mutant library. Antimicrob Agents Chemother. 2011 Nov;55(11):5090-8. doi: 10.1128/AAC.00687-11. Epub 2011 Aug 29. PubMed PMID: 21876045; PubMed Central PMCID: PMC3195011.  


Presson AP, Kim N, Xiaofei Y, Chen IS, Kim S. Methodology and software to detect viral integration site hot-spots. BMC Bioinformatics. 2011 Sep 14;12:367. doi: 10.1186/1471-2105-12-367. PubMed PMID: 21914224; PubMed Central PMCID: PMC3203353.   


Kim S, Kim N, Presson AP, An DS, Mao SH, Bonifacino AC, Donahue RE, Chow SA, Chen IS. High-throughput, sensitive quantification of repopulating hematopoietic stem cell clones. J Virol. 2010 Nov;84(22):11771-80. doi: 10.1128/JVI.01355-10. Epub 2010 Sep 15. PubMed PMID: 20844053; PubMed Central PMCID: PMC2977897.   


Kim S, Rusmevichientong A, Dong B, Remenyi R, Silverman RH, Chow SA. Fidelity of target site duplication and sequence preference during integration of xenotropic murine leukemia virus-related virus. PLoS One. 2010 Apr 20;5(4):e10255. doi: 10.1371/journal.pone.0010255. PubMed PMID: 20421928; PubMed Central PMCID: PMC2857682.   


Shimizu S, Kamata M, Kittipongdaja P, Chen KN, Kim S, Pang S, Boyer J, Qin FX, An DS, Chen IS. Characterization of a potent non-cytotoxic shRNA directed to the HIV-1 co-receptor CCR5. Genet Vaccines Ther. 2009 Jun 10;7:8. doi: 10.1186/1479-0556-7-8. PubMed PMID: 19515239; PubMed Central PMCID: PMC2701936.   


Vatakis DN*, Kim S*, Kim N, Chow SA, Zack JA. Human immunodeficiency virus integration efficiency and site selection in quiescent CD4+ T cells. J Virol. 2009 Jun;83(12):6222-33. doi: 10.1128/JVI.00356-09. Epub 2009 Apr 15. PubMed PMID: 19369341; PubMed Central PMCID: PMC2687367.   


Kim S, Kim N, Dong B, Boren D, Lee SA, Das Gupta J, Gaughan C, Klein EA, Lee C, Silverman RH, Chow SA. Integration site preference of xenotropic murine leukemia virus-related virus, a new human retrovirus associated with prostate cancer. J Virol. 2008 Oct;82(20):9964-77. doi: 10.1128/JVI.01299-08. Epub 2008 Aug 6. PubMed PMID: 18684813; PubMed Central PMCID: PMC2566297. 


Dong B, Kim S, Hong S, Das Gupta J, Malathi K, Klein EA, Ganem D, Derisi JL, Chow SA, Silverman RH. An infectious retrovirus susceptible to an IFN antiviral pathway from human prostate tumors. Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1655-60. Epub 2007 Jan 18. PubMed PMID: 17234809; PubMed Central PMCID: PMC1776164. 


Kim S, Kim Y, Liang T, Sinsheimer JS, Chow SA. A high-throughput method for cloning and sequencing human immunodeficiency virus type 1 integration sites. J Virol. 2006 Nov;80(22):11313-21. Epub 2006 Sep 13. PubMed PMID: 16971446; PubMed Central PMCID: PMC1642152. 


Kim Y, Kim S, Earnest TN, Hol WG. Precursor structure of cephalosporin acylase. Insights into autoproteolytic activation in a new N-terminal hydrolase family. J Biol Chem. 2002 Jan 25;277(4):2823-9. Epub 2001 Nov 8. PubMed PMID: 11706000. 


Kim S, Kim Y. Active site residues of cephalosporin acylase are critical not only for enzymatic catalysis but also for post-translational modification. J Biol Chem. 2001 Dec 21;276(51):48376-81. Epub 2001 Oct 16. PubMed PMID: 11604409.